PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa014290
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB_related
Protein Properties Length: 1036aa    MW: 116290 Da    PI: 9.27
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-31303PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding254.3e-084681340
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                      W++eE + +++a +++G + W+++a+ +  +R+ +++
        Lsa014290 46 HWSKEELDHFYEAYRKHGRD-WRKVASALR-NRSVEMV 81
                     5*****************77.*********.**98876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.21E-104291IPR009057Homeodomain-like
SMARTSM007173.2E-44391IPR001005SANT/Myb domain
PfamPF002493.7E-74681IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-54681IPR009057Homeodomain-like
CDDcd001673.44E-54781No hitNo description
SMARTSM011351.2E-51574675IPR033471DIRP domain
PfamPF065841.1E-29574673IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1036 aa     Download sequence    Send to blast
MGPAKKSRSV NKRFSYGNEI PPTKDGDNTY KKNQRKKKLS DMLGPHWSKE ELDHFYEAYR  60
KHGRDWRKVA SALRNRSVEM VEAVYSLNKA YLSLPEGTAS VAGFIAMMTD YYSNMEDRDS  120
EQEKNDGVGT SRKPQKRLQR KVPETIPKGS VDRIHLHPGA VLSDYGCMSL TKKKRSGGSK  180
PRVVGKRTPR FPVSHSHEYV KGEKSFLPTR KGIIKPKADD DEDVAHSIAM ALAEASKKGS  240
SPNRRASSLM SSPSHSAERM YDESDVGSGY GEDIEGSMEA DNTDFPRDKS KERINAGYVL  300
HDRKGSQGKK VRVDKKENKH LDYIREACSG TEGHNLSTLR RNFEFSDAKP SKSSQGSKKR  360
SKGAHTGRDE NSAFDALETL ANLSLMILPE ANGNGKDELV EDSHLLLSIP TSTSRQGEKR  420
KSSVPKRSRS ISTLEASDNK AQTSGKDSVD DTNIASEAKE SHHLITKVSR KRQKIVAPKI  480
PKSEAAIHTT GKESLESEAA ESKSIPQLAK NDKHTPSSID TRKEVDICTK VRSKHKLFKP  540
DTLFEAVGKD KPREELSNCL SNKLMRRWCA CEFFYSAIDD PWFAKQEFVE YLYHVGLGHV  600
PRLTRVEWGV IRSSLGKPRR FSINFLKEEK EKLNQYQDSV RTHYTELRSG SRDGLPTDLA  660
RPLSVGQRVV AIYPKTREIH DGTVLTVDHD HHRCRIQFDR PELGVEQIMD TDCMPLNPFE  720
NMPASLMRQT PVGKFLESLN EVKIKDQRLE GYTNTKSTSR EQLENMYDAA SIKSNLLSRN  780
HHGTHSAQFH AKEADVEAIA ELNRALDKKE AVVFELRRMN DDVLENQTDG EFALQESDAF  840
KKQYAAVLVQ LNEANAQVSS ALFRLRQRNT YQGNFLLTTL PKTVATEDSK CQVNEIVEIS  900
RTKARTMVDI AIQAISSLKL DPTVEIDKAV DYVNDRLPLD DSFVTVKGPD SKSTKSNPCD  960
LNKASVPSEL ITQCVATLFI IQKCTEREFP PAEVASILDS AVSSLQPWSP QNLQVYAEIQ  1020
KCMGIIKNQI LALVPT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012858965.10.0PREDICTED: protein ALWAYS EARLY 3
TrEMBLA0A103XFN00.0A0A103XFN0_CYNCS; DIRP-like protein
STRINGSolyc01g067560.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.21e-172DNA binding